Yes, according to a recent report by the Pakistan Institute of Legislative Development and Transparency (PILDAT), Supreme Court judges in Pakistan are paid significantly higher salaries than the President and Prime Minister.
The report states that Supreme Court judges are paid an annual salary of Rs. 4.4 million (approximately USD 28,000) while the President and Prime Minister are both paid an annual salary of just Rs. 1.5 million (approximately USD 9,500). This is significantly higher than the salaries of other civil servants, including members of the cabinet, who are paid an annual salary of Rs. 600,000 (approximately USD 3,800).